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Finally, the E=mc2 paper is available for download. It will be published in the 2009 Proceedings of the Natural Philosophy Alliance. Of special importance is the section on "The 'Conversion' of Matter into Motion," the main point being that what appears to be the case at one level is not at all the case at a deeper level.

Here is the final abstract:

Many popular accounts maintain that E=mc2 describes the conversion of matter into “pure energy,” often construed as a kind of matterless motion. Today, “dark energy” and “dark matter” are spoken of as if they were two different “things.” Some even hypothesize that the universe was filled with pure energy before it became filled with matter. This estrangement between matter and motion (separability) is common in popular culture and underlies the 20th century regression from realism to idealism in modern physics. There will be no fundamental change in modern physics until we adhere to the opposing assumption, INSEPARABILITY (Just as there can be no motion without matter, so there can be no matter without motion). Without it, it is impossible to explain the physical meaning of the equation. Like all equations involving aspects of reality, E=mc2 simply refers to the transformation of one kind of matter in motion into another kind of matter in motion and/or the transformation of one kind of the motion of matter into another kind of the motion of matter. The experimental success of the equation led to the increasing objectification of energy. However, being a matter-motion term like momentum and force, energy neither exists, nor does it move. It is simply an idea, a concept, a mathematical description of the motion of matter. Matter does not “contain” energy, for matter only can “contain” other things in motion. Energy is simply a mathematical term necessary for describing and relating the various forms of the motion of matter. A speculative illustration involving electron-positron annihilation demonstrates how matter (electrons and positrons) appears to be converted into motion (EM radiation) without violating INSEPARABILITY. In essence, E=mc2 describes the conversion of internal matter in motion to external matter in motion, and vice versa.